J4_4W29_005
3D structure
- PDB id
- 4W29 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- AUUAG*CAC*GGGGUCGGC*GUCAU
- Length
- 22 nucleotides
- Bulged bases
- 4W29|1|AX|U|8, 4W29|1|AX|G|44, 4W29|1|AX|G|45, 4W29|1|AX|G|46, 4W29|1|AX|U|47, 4W29|1|AX|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4W29|1|AX|A|6
4W29|1|AX|U|7
4W29|1|AX|U|8
4W29|1|AX|A|9
4W29|1|AX|G|10
*
4W29|1|AX|C|25
4W29|1|AX|A|26
4W29|1|AX|C|27
*
4W29|1|AX|G|43
4W29|1|AX|G|44
4W29|1|AX|G|45
4W29|1|AX|G|46
4W29|1|AX|U|47
4W29|1|AX|C|48
4W29|1|AX|G|49
4W29|1|AX|G|50
4W29|1|AX|C|51
*
4W29|1|AX|G|63
4W29|1|AX|U|64
4W29|1|AX|C|65
4W29|1|AX|A|66
4W29|1|AX|U|67
Current chains
- Chain AX
- tRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AM
- 30S ribosomal protein S13
- Chain AY
- Elongation factor G
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BQ
- 50S ribosomal protein L16
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