J4_4W29_008

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGUCUAG

Length

20 nucleotides

Bulged bases

4W29|1|BA|U|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4W29_008 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.4541

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4W29|1|BA|C|601
4W29|1|BA|G|602
4W29|1|BA|A|603
4W29|1|BA|G|604
*
4W29|1|BA|C|624
4W29|1|BA|G|625
4W29|1|BA|U|626
4W29|1|BA|A|627
4W29|1|BA|G|628
*
4W29|1|BA|C|635
4W29|1|BA|G|636
4W29|1|BA|A|637
4W29|1|BA|G|638
*
4W29|1|BA|C|650
4W29|1|BA|G|651
4W29|1|BA|U|652
4W29|1|BA|C|653
4W29|1|BA|U|654
4W29|1|BA|A|655
4W29|1|BA|G|656

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B8

50S ribosomal protein L35

Chain BF

50S ribosomal protein L4

Chain BP

50S ribosomal protein L15