3D structure

PDB id
4W29 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.
Experimental method
X-RAY DIFFRACTION
Resolution
3.8 Å

Loop

Sequence
CGAUAAA*UC*GCGC*GG
Length
15 nucleotides
Bulged bases
4W29|1|BA|G|1271, 4W29|1|BA|A|1272, 4W29|1|BA|U|1273, 4W29|1|BA|G|1647
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4W29_009 not in the Motif Atlas
Homologous match to J4_9DFE_003
Geometric discrepancy: 0.2423
The information below is about J4_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_64571.5
Basepair signature
cWW-F-cWW-tSS-cWW-F-cWW
Number of instances in this motif group
4

Unit IDs

4W29|1|BA|C|1270
4W29|1|BA|G|1271
4W29|1|BA|A|1272
4W29|1|BA|U|1273
4W29|1|BA|A|1274
4W29|1|BA|A|1275
4W29|1|BA|A|1276
*
4W29|1|BA|U|1294
4W29|1|BA|C|1295
*
4W29|1|BA|G|1645
4W29|1|BA|C|1646
4W29|1|BA|G|1647
4W29|1|BA|C|1648
*
4W29|1|BA|G|2009
4W29|1|BA|G|2010

Current chains

Chain BA
23S Ribosomal RNA

Nearby chains

Chain B5
50S ribosomal protein L32
Chain BR
50S ribosomal protein L17
Chain BW
50S ribosomal protein L22

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2826 s
Application loaded.