J4_4W29_028

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

4W29|1|DA|A|1444|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4W29_028 not in the Motif Atlas

Homologous match to J4_9DFE_006

Geometric discrepancy: 0.3711

The information below is about J4_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W29|1|DA|G|1444
4W29|1|DA|A|1444|||A
4W29|1|DA|C|1445
*
4W29|1|DA|G|1466
4W29|1|DA|C|1467
*
4W29|1|DA|G|1525
4W29|1|DA|G|1526
*
4W29|1|DA|C|1546
4W29|1|DA|C|1547

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains