J4_4W29_030

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

4W29|1|DA|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4W29_030 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.3125

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

4W29|1|DA|U|1833
4W29|1|DA|U|1834
4W29|1|DA|G|1835
*
4W29|1|DA|C|1905
4W29|1|DA|G|1906
*
4W29|1|DA|C|1924
4W29|1|DA|C|1925
4W29|1|DA|U|1926
4W29|1|DA|A|1927
4W29|1|DA|A|1928
4W29|1|DA|G|1929
4W29|1|DA|G|1930
4W29|1|DA|U|1931
4W29|1|DA|A|1932
4W29|1|DA|G|1933
*
4W29|1|DA|C|1967
4W29|1|DA|G|1968
4W29|1|DA|A|1969
4W29|1|DA|A|1970
4W29|1|DA|A|1971
4W29|1|DA|A|1972

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CX

Transfer RNA; tRNA

Chain DD

50S ribosomal protein L2