J4_4W2E_005

3D structure

PDB id

4W2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

4W2E|1|A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4W2E_005 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.1064

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4W2E|1|A|U|1313
4W2E|1|A|C|1314
*
4W2E|1|A|G|1338
4W2E|1|A|G|1339
4W2E|1|A|U|1340
4W2E|1|A|U|1341
4W2E|1|A|A|1342
4W2E|1|A|G|1343
*
4W2E|1|A|C|1404
4W2E|1|A|U|1405
*
4W2E|1|A|A|1597
4W2E|1|A|C|1598
4W2E|1|A|C|1599
4W2E|1|A|C|1600
4W2E|1|A|G|1601
4W2E|1|A|U|1602
4W2E|1|A|A|1603

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain X

50S ribosomal protein L23