J4_4W2E_015
3D structure
- PDB id
- 4W2E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGU(7MG)UCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 4W2E|1|x|4SU|8, 4W2E|1|x|U|47, 4W2E|1|x|C|48
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4W2E_015 not in the Motif Atlas
- Homologous match to J4_3WQY_001
- Geometric discrepancy: 0.2633
- The information below is about J4_3WQY_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
4W2E|1|x|A|7
4W2E|1|x|4SU|8
4W2E|1|x|A|9
4W2E|1|x|G|10
*
4W2E|1|x|C|25
4W2E|1|x|A|26
4W2E|1|x|G|27
*
4W2E|1|x|C|43
4W2E|1|x|G|44
4W2E|1|x|U|45
4W2E|1|x|7MG|46
4W2E|1|x|U|47
4W2E|1|x|C|48
4W2E|1|x|C|49
*
4W2E|1|x|G|65
4W2E|1|x|U|66
Current chains
- Chain x
- E-site tRNA
Nearby chains
- Chain 6
- 50S ribosomal protein L33
- Chain g
- 30S ribosomal protein S7
- Chain k
- 30S ribosomal protein S11
Coloring options: