J4_4W2F_001

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4W2F|1|AA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4W2F_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0633

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4W2F|1|AA|G|115
4W2F|1|AA|A|116
4W2F|1|AA|G|117
4W2F|1|AA|U|118
4W2F|1|AA|A|119
4W2F|1|AA|A|120
4W2F|1|AA|C|121
4W2F|1|AA|G|122
*
4W2F|1|AA|U|239
4W2F|1|AA|C|240
*
4W2F|1|AA|G|286
4W2F|1|AA|U|287
4W2F|1|AA|A|288
4W2F|1|AA|G|289
*
4W2F|1|AA|C|311
4W2F|1|AA|C|312

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AP

30S Ribosomal Protein S16

Chain AQ

30S Ribosomal Protein S17