J4_4W2F_010

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

4W2F|1|BA|U|1387

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4W2F_010 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0547

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4W2F|1|BA|G|1356
4W2F|1|BA|G|1357
4W2F|1|BA|U|1358
4W2F|1|BA|U|1359
4W2F|1|BA|C|1360
*
4W2F|1|BA|G|1384
4W2F|1|BA|G|1385
4W2F|1|BA|U|1386
4W2F|1|BA|U|1387
4W2F|1|BA|A|1388
4W2F|1|BA|G|1389
*
4W2F|1|BA|C|1450
4W2F|1|BA|U|1451
*
4W2F|1|BA|A|1643
4W2F|1|BA|C|1644
4W2F|1|BA|C|1645
4W2F|1|BA|C|1646
4W2F|1|BA|G|1647
4W2F|1|BA|U|1648
4W2F|1|BA|A|1649
4W2F|1|BA|C|1650

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B7

50S Ribosomal Protein L34

Chain BX

50S Ribosomal Protein L23