J4_4W2H_005

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4W2H|1|BA|U|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4W2H_005 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0467

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4W2H|1|BA|C|257
4W2H|1|BA|U|258
*
4W2H|1|BA|G|397
4W2H|1|BA|A|398
4W2H|1|BA|G|399
4W2H|1|BA|U|400
4W2H|1|BA|A|401
4W2H|1|BA|C|402
*
4W2H|1|BA|G|426
4W2H|1|BA|G|427
4W2H|1|BA|A|428
4W2H|1|BA|A|429
4W2H|1|BA|U|430
4W2H|1|BA|C|431
4W2H|1|BA|U|432
4W2H|1|BA|G|433
*
4W2H|1|BA|U|448
4W2H|1|BA|A|449
4W2H|1|BA|A|450
4W2H|1|BA|G|451

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B1

50S Ribosomal Protein L28

Chain BI

50S Ribosomal Protein L9