J4_4W2H_029
3D structure
- PDB id
- 4W2H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 4W2H|1|CX|4SU|8, 4W2H|1|CX|U|47, 4W2H|1|CX|C|48
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4W2H_029 not in the Motif Atlas
- Homologous match to J4_4WT8_034
- Geometric discrepancy: 0.1775
- The information below is about J4_4WT8_034
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
4W2H|1|CX|G|7
4W2H|1|CX|4SU|8
4W2H|1|CX|G|9
4W2H|1|CX|G|10
*
4W2H|1|CX|C|25
4W2H|1|CX|G|26
4W2H|1|CX|U|27
*
4W2H|1|CX|A|43
4W2H|1|CX|A|44
4W2H|1|CX|G|45
4W2H|1|CX|G|46
4W2H|1|CX|U|47
4W2H|1|CX|C|48
4W2H|1|CX|G|49
*
4W2H|1|CX|C|65
4W2H|1|CX|C|66
Current chains
- Chain CX
- P-site tRNA
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CM
- 30S Ribosomal Protein S13
- Chain D0
- 50S Ribosomal Protein L27
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DQ
- 50S Ribosomal Protein L16
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