J4_4W2I_007

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4W2I|1|BA|U|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4W2I_007 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0671

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4W2I|1|BA|C|257
4W2I|1|BA|U|258
*
4W2I|1|BA|G|397
4W2I|1|BA|A|398
4W2I|1|BA|G|399
4W2I|1|BA|U|400
4W2I|1|BA|A|401
4W2I|1|BA|C|402
*
4W2I|1|BA|G|426
4W2I|1|BA|G|427
4W2I|1|BA|A|428
4W2I|1|BA|A|429
4W2I|1|BA|U|430
4W2I|1|BA|C|431
4W2I|1|BA|U|432
4W2I|1|BA|G|433
*
4W2I|1|BA|U|448
4W2I|1|BA|A|449
4W2I|1|BA|A|450
4W2I|1|BA|G|451

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B1

50S Ribosomal Protein L28

Chain BI

50S Ribosomal Protein L9