J4_4W2I_019
3D structure
- PDB id
- 4W2I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GGG*CGAAAG*CCCUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 4W2I|1|CA|G|576, 4W2I|1|CA|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4W2I_019 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.0669
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
4W2I|1|CA|G|575
4W2I|1|CA|G|576
4W2I|1|CA|G|577
*
4W2I|1|CA|C|764
4W2I|1|CA|G|765
4W2I|1|CA|A|766
4W2I|1|CA|A|767
4W2I|1|CA|A|768
4W2I|1|CA|G|769
*
4W2I|1|CA|C|810
4W2I|1|CA|C|811
4W2I|1|CA|C|812
4W2I|1|CA|U|813
4W2I|1|CA|A|814
4W2I|1|CA|A|815
4W2I|1|CA|A|816
4W2I|1|CA|C|817
4W2I|1|CA|G|818
4W2I|1|CA|A|819
4W2I|1|CA|U|820
4W2I|1|CA|G|821
*
4W2I|1|CA|C|879
4W2I|1|CA|C|880
Current chains
- Chain CA
- 16S Ribosomal RNA
Nearby chains
- Chain CH
- 30S Ribosomal Protein S8
- Chain CL
- 30S Ribosomal Protein S12
- Chain CO
- 30S Ribosomal Protein S15
- Chain CQ
- 30S Ribosomal Protein S17
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: