J4_4W2I_032

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4W2I_032 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.1012

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4W2I|1|DA|G|2643
4W2I|1|DA|G|2644
4W2I|1|DA|G|2645
4W2I|1|DA|C|2646
*
4W2I|1|DA|G|2674
4W2I|1|DA|A|2675
4W2I|1|DA|C|2676
*
4W2I|1|DA|G|2731
4W2I|1|DA|G|2732
4W2I|1|DA|A|2733
4W2I|1|DA|A|2734
4W2I|1|DA|G|2735
*
4W2I|1|DA|C|2769
4W2I|1|DA|G|2770
4W2I|1|DA|C|2771

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DE

50S Ribosomal Protein L3

Chain DN

50S Ribosomal Protein L13

Chain DO

50S Ribosomal Protein L14