J4_4W4G_006

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4W4G|1|RA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4W4G_006 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1348

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4W4G|1|RA|C|268
4W4G|1|RA|U|269
*
4W4G|1|RA|G|370
4W4G|1|RA|A|371
4W4G|1|RA|G|372
4W4G|1|RA|U|373
4W4G|1|RA|A|374
4W4G|1|RA|C|375
*
4W4G|1|RA|G|399
4W4G|1|RA|G|400
4W4G|1|RA|A|401
4W4G|1|RA|A|402
4W4G|1|RA|U|403
4W4G|1|RA|C|404
4W4G|1|RA|U|405
4W4G|1|RA|G|406
*
4W4G|1|RA|U|421
4W4G|1|RA|A|422
4W4G|1|RA|A|423
4W4G|1|RA|G|424

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RI

50S ribosomal protein L9