J4_4W4G_016

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4W4G|1|XA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4W4G_016 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0502

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4W4G|1|XA|G|115
4W4G|1|XA|A|116
4W4G|1|XA|G|117
4W4G|1|XA|U|118
4W4G|1|XA|A|119
4W4G|1|XA|A|120
4W4G|1|XA|C|121
4W4G|1|XA|G|122
*
4W4G|1|XA|U|239
4W4G|1|XA|C|240
*
4W4G|1|XA|G|286
4W4G|1|XA|U|287
4W4G|1|XA|A|288
4W4G|1|XA|G|289
*
4W4G|1|XA|C|311
4W4G|1|XA|C|312

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XP

30S ribosomal protein S16

Chain XQ

30S ribosomal protein S17