J4_4WCE_005

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

4WCE|1|X|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WCE_005 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.0551

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4WCE|1|X|G|1347
4WCE|1|X|U|1348
4WCE|1|X|U|1349
4WCE|1|X|U|1350
4WCE|1|X|C|1351
*
4WCE|1|X|G|1375
4WCE|1|X|G|1376
4WCE|1|X|U|1377
4WCE|1|X|U|1378
4WCE|1|X|A|1379
4WCE|1|X|G|1380
*
4WCE|1|X|C|1441
4WCE|1|X|C|1442
*
4WCE|1|X|G|1641
4WCE|1|X|C|1642
4WCE|1|X|C|1643
4WCE|1|X|C|1644
4WCE|1|X|G|1645
4WCE|1|X|U|1646
4WCE|1|X|A|1647
4WCE|1|X|C|1648

Current chains

Chain X

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain Q

50S ribosomal protein L23