J4_4WCE_007

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WCE_007 not in the Motif Atlas

Homologous match to J4_4WF9_007

Geometric discrepancy: 0.0715

The information below is about J4_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4WCE|1|X|G|1799
4WCE|1|X|A|1800
4WCE|1|X|C|1801
4WCE|1|X|U|1802
4WCE|1|X|G|1803
*
4WCE|1|X|C|1815
4WCE|1|X|A|1816
4WCE|1|X|C|1817
4WCE|1|X|A|1818
4WCE|1|X|G|1819
*
4WCE|1|X|U|1854
4WCE|1|X|G|1855
4WCE|1|X|A|1856
4WCE|1|X|C|1857
*
4WCE|1|X|G|2002
4WCE|1|X|U|2003
4WCE|1|X|A|2004
4WCE|1|X|A|2005
4WCE|1|X|C|2006

Current chains

Chain X

23S rRNA

Nearby chains

Chain A

50S ribosomal protein L2