J4_4WF1_004

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4WF1|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WF1_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0616

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4WF1|1|BA|C|268
4WF1|1|BA|C|269
*
4WF1|1|BA|G|370
4WF1|1|BA|A|371
4WF1|1|BA|G|372
4WF1|1|BA|U|373
4WF1|1|BA|A|374
4WF1|1|BA|G|375
*
4WF1|1|BA|U|399
4WF1|1|BA|G|400
4WF1|1|BA|A|401
4WF1|1|BA|A|402
4WF1|1|BA|U|403
4WF1|1|BA|A|404
4WF1|1|BA|U|405
4WF1|1|BA|G|406
*
4WF1|1|BA|C|421
4WF1|1|BA|A|422
4WF1|1|BA|A|423
4WF1|1|BA|G|424

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BH

50S ribosomal protein L9

Chain BX

50S ribosomal protein L28