J4_4WF1_009

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

4WF1|1|BA|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WF1_009 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0486

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4WF1|1|BA|U|1313
4WF1|1|BA|C|1314
*
4WF1|1|BA|G|1338
4WF1|1|BA|G|1339
4WF1|1|BA|U|1340
4WF1|1|BA|G|1341
4WF1|1|BA|A|1342
4WF1|1|BA|G|1343
*
4WF1|1|BA|C|1404
4WF1|1|BA|U|1405
*
4WF1|1|BA|A|1597
4WF1|1|BA|A|1598
4WF1|1|BA|U|1599
4WF1|1|BA|C|1600
4WF1|1|BA|G|1601
4WF1|1|BA|U|1602
4WF1|1|BA|A|1603

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BT

50S ribosomal protein L23