J4_4WF1_014

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

4WF1|1|CA|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WF1_014 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1289

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4WF1|1|CA|G|115
4WF1|1|CA|A|116
4WF1|1|CA|G|117
4WF1|1|CA|U|118
4WF1|1|CA|A|119
4WF1|1|CA|A|120
4WF1|1|CA|U|121
4WF1|1|CA|G|122
*
4WF1|1|CA|U|239
4WF1|1|CA|G|240
*
4WF1|1|CA|C|286
4WF1|1|CA|U|287
4WF1|1|CA|A|288
4WF1|1|CA|G|289
*
4WF1|1|CA|C|311
4WF1|1|CA|C|312

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CP

30S ribosomal protein S16

Chain CQ

30S ribosomal protein S17