J4_4WF9_008

3D structure

PDB id

4WF9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

4WF9|1|X|C|2312
4WF9|1|X|A|2313
4WF9|1|X|A|2314
4WF9|1|X|A|2315
4WF9|1|X|G|2316
*
4WF9|1|X|U|2370
4WF9|1|X|U|2371
4WF9|1|X|G|2372
4WF9|1|X|A|2373
4WF9|1|X|C|2374
*
4WF9|1|X|G|2397
4WF9|1|X|G|2398
4WF9|1|X|G|2399
*
4WF9|1|X|C|2408
4WF9|1|X|G|2409
4WF9|1|X|G|2410

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain T

50S ribosomal protein L27