J4_4WFA_001

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4WFA|1|X|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WFA_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.0919

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4WFA|1|X|C|271
4WFA|1|X|C|272
*
4WFA|1|X|G|416
4WFA|1|X|A|417
4WFA|1|X|G|418
4WFA|1|X|U|419
4WFA|1|X|A|420
4WFA|1|X|C|421
*
4WFA|1|X|G|445
4WFA|1|X|G|446
4WFA|1|X|A|447
4WFA|1|X|A|448
4WFA|1|X|U|449
4WFA|1|X|C|450
4WFA|1|X|U|451
4WFA|1|X|G|452
*
4WFA|1|X|U|467
4WFA|1|X|A|468
4WFA|1|X|A|469
4WFA|1|X|G|470

Current chains

Chain X

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L28