J4_4WFA_004

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

CGAAAG*CC*GAGC*GG

Length

14 nucleotides

Bulged bases

4WFA|1|X|G|1309, 4WFA|1|X|A|1310, 4WFA|1|X|A|1312, 4WFA|1|X|G|1691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WFA_004 not in the Motif Atlas

Homologous match to J4_4WF9_004

Geometric discrepancy: 0.0712

The information below is about J4_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

4WFA|1|X|C|1308
4WFA|1|X|G|1309
4WFA|1|X|A|1310
4WFA|1|X|A|1311
4WFA|1|X|A|1312
4WFA|1|X|G|1313
*
4WFA|1|X|C|1331
4WFA|1|X|C|1332
*
4WFA|1|X|G|1689
4WFA|1|X|A|1690
4WFA|1|X|G|1691
4WFA|1|X|C|1692
*
4WFA|1|X|G|2036
4WFA|1|X|G|2037

Current chains

Chain X

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L17

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32