J4_4WFB_001

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4WFB|1|X|C|450, 4WFB|1|X|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WFB_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1169

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4WFB|1|X|C|271
4WFB|1|X|C|272
*
4WFB|1|X|G|416
4WFB|1|X|A|417
4WFB|1|X|G|418
4WFB|1|X|U|419
4WFB|1|X|A|420
4WFB|1|X|C|421
*
4WFB|1|X|G|445
4WFB|1|X|G|446
4WFB|1|X|A|447
4WFB|1|X|A|448
4WFB|1|X|U|449
4WFB|1|X|C|450
4WFB|1|X|U|451
4WFB|1|X|G|452
*
4WFB|1|X|U|467
4WFB|1|X|A|468
4WFB|1|X|A|469
4WFB|1|X|G|470

Current chains

Chain X

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L28