J4_4WFB_003
3D structure
- PDB id
- 4WFB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.43 Å
Loop
- Sequence
- CAAG*CGUAG*CGAGU*GCGUUUAG
- Length
- 22 nucleotides
- Bulged bases
- 4WFB|1|X|U|698, 4WFB|1|X|U|699
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4WFB_003 not in the Motif Atlas
- Homologous match to J4_4WF9_003
- Geometric discrepancy: 0.0826
- The information below is about J4_4WF9_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69347.1
- Basepair signature
- cWW-F-F-F-F-cWW-F-F-F-cWW-F-F-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
4WFB|1|X|C|644
4WFB|1|X|A|645
4WFB|1|X|A|646
4WFB|1|X|G|647
*
4WFB|1|X|C|669
4WFB|1|X|G|670
4WFB|1|X|U|671
4WFB|1|X|A|672
4WFB|1|X|G|673
*
4WFB|1|X|C|680
4WFB|1|X|G|681
4WFB|1|X|A|682
4WFB|1|X|G|683
4WFB|1|X|U|684
*
4WFB|1|X|G|694
4WFB|1|X|C|695
4WFB|1|X|G|696
4WFB|1|X|U|697
4WFB|1|X|U|698
4WFB|1|X|U|699
4WFB|1|X|A|700
4WFB|1|X|G|701
Current chains
- Chain X
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain C
- 50S ribosomal protein L4
- Chain I
- 50S ribosomal protein L15
Coloring options: