J4_4WJ3_002
3D structure
- PDB id
- 4WJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the asparagine transamidosome from Pseudomonas aeruginosa
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- AUAG*CAA*UGGGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 4WJ3|1|R|U|8, 4WJ3|1|R|U|47, 4WJ3|1|R|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4WJ3_002 not in the Motif Atlas
- Homologous match to J4_7UZ0_001
- Geometric discrepancy: 0.2355
- The information below is about J4_7UZ0_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
4WJ3|1|R|A|7
4WJ3|1|R|U|8
4WJ3|1|R|A|9
4WJ3|1|R|G|10
*
4WJ3|1|R|C|25
4WJ3|1|R|A|26
4WJ3|1|R|A|27
*
4WJ3|1|R|U|43
4WJ3|1|R|G|44
4WJ3|1|R|G|45
4WJ3|1|R|G|46
4WJ3|1|R|U|47
4WJ3|1|R|C|48
4WJ3|1|R|C|49
*
4WJ3|1|R|G|65
4WJ3|1|R|U|66
Current chains
- Chain R
- 76mer-tRNA
Nearby chains
- Chain B
- Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
- Chain M
- Aspartate--tRNA(Asp/Asn) ligase
- Chain N
- Aspartate--tRNA(Asp/Asn) ligase
Coloring options: