J4_4WOI_002

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

4WOI|1|AA|C|183, 4WOI|1|AA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WOI_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1251

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4WOI|1|AA|G|142
4WOI|1|AA|A|143
4WOI|1|AA|G|144
*
4WOI|1|AA|C|178
4WOI|1|AA|A|179
4WOI|1|AA|U|180
4WOI|1|AA|A|181
4WOI|1|AA|A|182
4WOI|1|AA|C|183
4WOI|1|AA|G|184
*
4WOI|1|AA|C|193
4WOI|1|AA|C|194
4WOI|1|AA|A|195
4WOI|1|AA|A|196
4WOI|1|AA|A|197
4WOI|1|AA|G|198
*
4WOI|1|AA|U|219
4WOI|1|AA|G|220
4WOI|1|AA|C|221

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20