J4_4WOI_005

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4WOI|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WOI_005 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1024

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4WOI|1|BA|C|268
4WOI|1|BA|C|269
*
4WOI|1|BA|G|370
4WOI|1|BA|A|371
4WOI|1|BA|G|372
4WOI|1|BA|U|373
4WOI|1|BA|A|374
4WOI|1|BA|G|375
*
4WOI|1|BA|U|399
4WOI|1|BA|G|400
4WOI|1|BA|A|401
4WOI|1|BA|A|402
4WOI|1|BA|U|403
4WOI|1|BA|A|404
4WOI|1|BA|U|405
4WOI|1|BA|G|406
*
4WOI|1|BA|C|421
4WOI|1|BA|A|422
4WOI|1|BA|A|423
4WOI|1|BA|G|424

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L9

Chain BX

50S ribosomal protein L28