3D structure

PDB id
4WOI (explore in PDB, NAKB, or RNA 3D Hub)
Description
4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CGAUAAA*UC*GCUU*AG
Length
15 nucleotides
Bulged bases
4WOI|1|BA|G|1271, 4WOI|1|BA|A|1272, 4WOI|1|BA|U|1273, 4WOI|1|BA|U|1647
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4WOI_008 not in the Motif Atlas
Homologous match to J4_5J7L_021
Geometric discrepancy: 0.0573
The information below is about J4_5J7L_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_64571.5
Basepair signature
cWW-F-cWW-tSS-cWW-F-cWW
Number of instances in this motif group
4

Unit IDs

4WOI|1|BA|C|1270
4WOI|1|BA|G|1271
4WOI|1|BA|A|1272
4WOI|1|BA|U|1273
4WOI|1|BA|A|1274
4WOI|1|BA|A|1275
4WOI|1|BA|A|1276
*
4WOI|1|BA|U|1294
4WOI|1|BA|C|1295
*
4WOI|1|BA|G|1645
4WOI|1|BA|C|1646
4WOI|1|BA|U|1647
4WOI|1|BA|U|1648
*
4WOI|1|BA|A|2009
4WOI|1|BA|G|2010

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B0
50S ribosomal protein L32
Chain BN
50S ribosomal protein L17
Chain BS
50S ribosomal protein L22

Coloring options:


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