J4_4WOI_021

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

4WOI|1|CA|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WOI_021 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0829

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4WOI|1|CA|U|1313
4WOI|1|CA|C|1314
*
4WOI|1|CA|G|1338
4WOI|1|CA|G|1339
4WOI|1|CA|U|1340
4WOI|1|CA|G|1341
4WOI|1|CA|A|1342
4WOI|1|CA|G|1343
*
4WOI|1|CA|C|1404
4WOI|1|CA|U|1405
*
4WOI|1|CA|A|1597
4WOI|1|CA|A|1598
4WOI|1|CA|U|1599
4WOI|1|CA|C|1600
4WOI|1|CA|G|1601
4WOI|1|CA|U|1602
4WOI|1|CA|A|1603

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C2

50S ribosomal protein L34

Chain CT

50S ribosomal protein L23