3D structure

PDB id
4WOI (explore in PDB, NAKB, or RNA 3D Hub)
Description
4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GAGUAAUG*UG*CUAG*CC
Length
16 nucleotides
Bulged bases
4WOI|1|DA|U|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4WOI_027 not in the Motif Atlas
Homologous match to J4_5J7L_001
Geometric discrepancy: 0.1463
The information below is about J4_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

4WOI|1|DA|G|115
4WOI|1|DA|A|116
4WOI|1|DA|G|117
4WOI|1|DA|U|118
4WOI|1|DA|A|119
4WOI|1|DA|A|120
4WOI|1|DA|U|121
4WOI|1|DA|G|122
*
4WOI|1|DA|U|239
4WOI|1|DA|G|240
*
4WOI|1|DA|C|286
4WOI|1|DA|U|287
4WOI|1|DA|A|288
4WOI|1|DA|G|289
*
4WOI|1|DA|C|311
4WOI|1|DA|C|312

Current chains

Chain DA
16S ribosomal RNA

Nearby chains

Chain DP
30S ribosomal protein S16
Chain DQ
30S ribosomal protein S17

Coloring options:


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