J4_4WOI_030
3D structure
- PDB id
- 4WOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AUAG*CAG*CGUGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 4WOI|1|DW|U|8, 4WOI|1|DW|U|47, 4WOI|1|DW|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4WOI_030 not in the Motif Atlas
- Homologous match to J4_3WFS_001
- Geometric discrepancy: 0.3836
- The information below is about J4_3WFS_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_36296.3
- Basepair signature
- cWW-F-cWW-cWW-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
4WOI|1|DW|A|7
4WOI|1|DW|U|8
4WOI|1|DW|A|9
4WOI|1|DW|G|10
*
4WOI|1|DW|C|25
4WOI|1|DW|A|26
4WOI|1|DW|G|27
*
4WOI|1|DW|C|43
4WOI|1|DW|G|44
4WOI|1|DW|U|45
4WOI|1|DW|G|46
4WOI|1|DW|U|47
4WOI|1|DW|C|48
4WOI|1|DW|C|49
*
4WOI|1|DW|G|65
4WOI|1|DW|U|66
Current chains
- Chain DW
- Phenylalanine specific transfer RNA, tRNA-Phe
Nearby chains
- Chain CA
- Large subunit ribosomal RNA; LSU rRNA
- Chain CM
- 50S ribosomal protein L16
- Chain DA
- Small subunit ribosomal RNA; SSU rRNA
- Chain DM
- 30S ribosomal protein S13
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