3D structure

PDB id
4WOI (explore in PDB, NAKB, or RNA 3D Hub)
Description
4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
AUAG*CAG*CGUGUCC*GU
Length
16 nucleotides
Bulged bases
4WOI|1|DW|U|8, 4WOI|1|DW|U|47, 4WOI|1|DW|C|48
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4WOI_030 not in the Motif Atlas
Homologous match to J4_3WFS_001
Geometric discrepancy: 0.3836
The information below is about J4_3WFS_001
Detailed Annotation
tRNA junction
Broad Annotation
No text annotation
Motif group
J4_36296.3
Basepair signature
cWW-F-cWW-cWW-F-F-F-cWW
Number of instances in this motif group
5

Unit IDs

4WOI|1|DW|A|7
4WOI|1|DW|U|8
4WOI|1|DW|A|9
4WOI|1|DW|G|10
*
4WOI|1|DW|C|25
4WOI|1|DW|A|26
4WOI|1|DW|G|27
*
4WOI|1|DW|C|43
4WOI|1|DW|G|44
4WOI|1|DW|U|45
4WOI|1|DW|G|46
4WOI|1|DW|U|47
4WOI|1|DW|C|48
4WOI|1|DW|C|49
*
4WOI|1|DW|G|65
4WOI|1|DW|U|66

Current chains

Chain DW
Phenylalanine specific transfer RNA, tRNA-Phe

Nearby chains

Chain CA
Large subunit ribosomal RNA; LSU rRNA
Chain CM
50S ribosomal protein L16
Chain DA
Small subunit ribosomal RNA; SSU rRNA
Chain DM
30S ribosomal protein S13

Coloring options:


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