J4_4WPO_001

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4WPO|1|AA|U|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WPO_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0719

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4WPO|1|AA|C|257
4WPO|1|AA|U|258
*
4WPO|1|AA|G|397
4WPO|1|AA|A|398
4WPO|1|AA|G|399
4WPO|1|AA|U|400
4WPO|1|AA|A|401
4WPO|1|AA|C|402
*
4WPO|1|AA|G|426
4WPO|1|AA|G|427
4WPO|1|AA|A|428
4WPO|1|AA|A|429
4WPO|1|AA|U|430
4WPO|1|AA|C|431
4WPO|1|AA|U|432
4WPO|1|AA|G|433
*
4WPO|1|AA|U|448
4WPO|1|AA|A|449
4WPO|1|AA|A|450
4WPO|1|AA|G|451

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L28