J4_4WPO_010

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WPO_010 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.0502

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4WPO|1|AA|G|2655
4WPO|1|AA|G|2656
4WPO|1|AA|G|2657
4WPO|1|AA|C|2658
*
4WPO|1|AA|G|2686
4WPO|1|AA|A|2687
4WPO|1|AA|C|2688
*
4WPO|1|AA|G|2744
4WPO|1|AA|G|2745
4WPO|1|AA|A|2746
4WPO|1|AA|A|2747
4WPO|1|AA|G|2748
*
4WPO|1|AA|C|2782
4WPO|1|AA|G|2783
4WPO|1|AA|C|2784

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AN

50S ribosomal protein L13

Chain AO

50S ribosomal protein L14