J4_4WPO_011

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4WPO|1|BA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WPO_011 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0692

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4WPO|1|BA|G|115
4WPO|1|BA|A|116
4WPO|1|BA|G|117
4WPO|1|BA|U|118
4WPO|1|BA|A|119
4WPO|1|BA|A|120
4WPO|1|BA|C|121
4WPO|1|BA|G|122
*
4WPO|1|BA|U|239
4WPO|1|BA|C|240
*
4WPO|1|BA|G|286
4WPO|1|BA|U|287
4WPO|1|BA|A|288
4WPO|1|BA|G|289
*
4WPO|1|BA|C|311
4WPO|1|BA|C|312

Current chains

Chain BA

16S Ribosomal RNA

Nearby chains

Chain BP

30S ribosomal protein S16

Chain BQ

30S ribosomal protein S17