J4_4WPO_014
3D structure
- PDB id
- 4WPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGU(7MG)UCCUU*GAGU
- Length
- 20 nucleotides
- Bulged bases
- 4WPO|1|BW|4SU|8, 4WPO|1|BW|U|47, 4WPO|1|BW|C|48
- QA status
- Modified nucleotides: 4SU, 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4WPO_014 not in the Motif Atlas
- Homologous match to J4_7U2I_014
- Geometric discrepancy: 0.2766
- The information below is about J4_7U2I_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_47701.1
- Basepair signature
- cWW-F-F-cWW-F-cWW-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
4WPO|1|BW|A|7
4WPO|1|BW|4SU|8
4WPO|1|BW|A|9
4WPO|1|BW|G|10
*
4WPO|1|BW|C|25
4WPO|1|BW|A|26
4WPO|1|BW|G|27
*
4WPO|1|BW|C|43
4WPO|1|BW|G|44
4WPO|1|BW|U|45
4WPO|1|BW|7MG|46
4WPO|1|BW|U|47
4WPO|1|BW|C|48
4WPO|1|BW|C|49
4WPO|1|BW|U|50
4WPO|1|BW|U|51
*
4WPO|1|BW|G|63
4WPO|1|BW|A|64
4WPO|1|BW|G|65
4WPO|1|BW|U|66
Current chains
- Chain BW
- A-site tRNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AQ
- 50S ribosomal protein L16
- Chain BZ
- 50S ribosomal protein L9,Elongation factor G
Coloring options: