J4_4WPO_020

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

4WPO|1|CA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WPO_020 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0571

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4WPO|1|CA|G|1310
4WPO|1|CA|G|1311
4WPO|1|CA|U|1312
4WPO|1|CA|U|1313
4WPO|1|CA|C|1314
*
4WPO|1|CA|G|1338
4WPO|1|CA|G|1339
4WPO|1|CA|U|1340
4WPO|1|CA|U|1341
4WPO|1|CA|A|1342
4WPO|1|CA|G|1343
*
4WPO|1|CA|C|1404
4WPO|1|CA|U|1405
*
4WPO|1|CA|A|1597
4WPO|1|CA|C|1598
4WPO|1|CA|C|1599
4WPO|1|CA|C|1600
4WPO|1|CA|G|1601
4WPO|1|CA|U|1602
4WPO|1|CA|A|1603
4WPO|1|CA|C|1604

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C7

50S ribosomal protein L34

Chain CX

50S ribosomal protein L23