J4_4WPO_032
3D structure
- PDB id
- 4WPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGU(7MG)UCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 4WPO|1|DY|4SU|8, 4WPO|1|DY|U|47, 4WPO|1|DY|C|48
- QA status
- Modified nucleotides: 4SU, 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4WPO_032 not in the Motif Atlas
- Homologous match to J4_4WT8_031
- Geometric discrepancy: 0.2577
- The information below is about J4_4WT8_031
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.26
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 56
Unit IDs
4WPO|1|DY|A|7
4WPO|1|DY|4SU|8
4WPO|1|DY|A|9
4WPO|1|DY|G|10
*
4WPO|1|DY|C|25
4WPO|1|DY|A|26
4WPO|1|DY|G|27
*
4WPO|1|DY|C|43
4WPO|1|DY|G|44
4WPO|1|DY|U|45
4WPO|1|DY|7MG|46
4WPO|1|DY|U|47
4WPO|1|DY|C|48
4WPO|1|DY|C|49
*
4WPO|1|DY|G|65
4WPO|1|DY|U|66
Current chains
- Chain DY
- E-site tRNA
Nearby chains
- Chain C6
- 50S ribosomal protein L33
- Chain DG
- 30S ribosomal protein S7
- Chain DK
- 30S ribosomal protein S11
Coloring options: