J4_4WQ1_013

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4WQ1|1|1G|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQ1_013 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0692

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4WQ1|1|1G|G|115
4WQ1|1|1G|A|116
4WQ1|1|1G|G|117
4WQ1|1|1G|U|118
4WQ1|1|1G|A|119
4WQ1|1|1G|A|120
4WQ1|1|1G|C|121
4WQ1|1|1G|G|122
*
4WQ1|1|1G|U|239
4WQ1|1|1G|C|240
*
4WQ1|1|1G|G|286
4WQ1|1|1G|U|287
4WQ1|1|1G|A|288
4WQ1|1|1G|G|289
*
4WQ1|1|1G|C|311
4WQ1|1|1G|C|312

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 7A

30S ribosomal protein S16

Chain 8A

30S ribosomal protein S17