J4_4WQ1_020

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

4WQ1|1|1H|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQ1_020 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.0724

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4WQ1|1|1H|U|1313
4WQ1|1|1H|C|1314
*
4WQ1|1|1H|G|1338
4WQ1|1|1H|G|1339
4WQ1|1|1H|U|1340
4WQ1|1|1H|U|1341
4WQ1|1|1H|A|1342
4WQ1|1|1H|G|1343
*
4WQ1|1|1H|C|1404
4WQ1|1|1H|U|1405
*
4WQ1|1|1H|A|1597
4WQ1|1|1H|C|1598
4WQ1|1|1H|C|1599
4WQ1|1|1H|C|1600
4WQ1|1|1H|G|1601
4WQ1|1|1H|U|1602
4WQ1|1|1H|A|1603

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain F8

50S ribosomal protein L23