J4_4WQF_001

3D structure

PDB id

4WQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4WQF|1|AA|U|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQF_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0545

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4WQF|1|AA|C|257
4WQF|1|AA|U|258
*
4WQF|1|AA|G|397
4WQF|1|AA|A|398
4WQF|1|AA|G|399
4WQF|1|AA|U|400
4WQF|1|AA|A|401
4WQF|1|AA|C|402
*
4WQF|1|AA|G|426
4WQF|1|AA|G|427
4WQF|1|AA|A|428
4WQF|1|AA|A|429
4WQF|1|AA|U|430
4WQF|1|AA|C|431
4WQF|1|AA|U|432
4WQF|1|AA|G|433
*
4WQF|1|AA|U|448
4WQF|1|AA|A|449
4WQF|1|AA|A|450
4WQF|1|AA|G|451

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L28