J4_4WQR_004

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4WQR|1|14|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQR_004 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1016

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4WQR|1|14|C|268
4WQR|1|14|U|269
*
4WQR|1|14|G|370
4WQR|1|14|A|371
4WQR|1|14|G|372
4WQR|1|14|U|373
4WQR|1|14|A|374
4WQR|1|14|C|375
*
4WQR|1|14|G|399
4WQR|1|14|G|400
4WQR|1|14|A|401
4WQR|1|14|A|402
4WQR|1|14|U|403
4WQR|1|14|C|404
4WQR|1|14|U|405
4WQR|1|14|G|406
*
4WQR|1|14|U|421
4WQR|1|14|A|422
4WQR|1|14|A|423
4WQR|1|14|G|424

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 69

50S ribosomal protein L9

Chain F5

50S ribosomal protein L28