J4_4WQR_009

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

4WQR|1|14|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQR_009 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.1144

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4WQR|1|14|U|1313
4WQR|1|14|C|1314
*
4WQR|1|14|G|1338
4WQR|1|14|G|1339
4WQR|1|14|U|1340
4WQR|1|14|U|1341
4WQR|1|14|A|1342
4WQR|1|14|G|1343
*
4WQR|1|14|C|1404
4WQR|1|14|U|1405
*
4WQR|1|14|A|1597
4WQR|1|14|C|1598
4WQR|1|14|C|1599
4WQR|1|14|C|1600
4WQR|1|14|G|1601
4WQR|1|14|U|1602
4WQR|1|14|A|1603

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L23

Chain L5

50S ribosomal protein L34