J4_4WQR_033

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

AUAG*CAG*CGUGUCC*GU

Length

16 nucleotides

Bulged bases

4WQR|1|1L|U|8, 4WQR|1|1L|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQR_033 not in the Motif Atlas

Homologous match to J4_7LYF_001

Geometric discrepancy: 0.4156

The information below is about J4_7LYF_001

Detailed Annotation

Virus junction

Broad Annotation

Virus junction

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

4WQR|1|1L|A|7
4WQR|1|1L|U|8
4WQR|1|1L|A|9
4WQR|1|1L|G|10
*
4WQR|1|1L|C|25
4WQR|1|1L|A|26
4WQR|1|1L|G|27
*
4WQR|1|1L|C|43
4WQR|1|1L|G|44
4WQR|1|1L|U|45
4WQR|1|1L|G|46
4WQR|1|1L|U|47
4WQR|1|1L|C|48
4WQR|1|1L|C|49
*
4WQR|1|1L|G|65
4WQR|1|1L|U|66

Current chains

Chain 1L

tRNA-Phe

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA