J4_4WQU_001

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4WQU|1|AA|U|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQU_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0747

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4WQU|1|AA|C|257
4WQU|1|AA|U|258
*
4WQU|1|AA|G|397
4WQU|1|AA|A|398
4WQU|1|AA|G|399
4WQU|1|AA|U|400
4WQU|1|AA|A|401
4WQU|1|AA|C|402
*
4WQU|1|AA|G|426
4WQU|1|AA|G|427
4WQU|1|AA|A|428
4WQU|1|AA|A|429
4WQU|1|AA|U|430
4WQU|1|AA|C|431
4WQU|1|AA|U|432
4WQU|1|AA|G|433
*
4WQU|1|AA|U|448
4WQU|1|AA|A|449
4WQU|1|AA|A|450
4WQU|1|AA|G|451

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L28