J4_4WQU_010

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQU_010 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.0627

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4WQU|1|AA|G|2655
4WQU|1|AA|G|2656
4WQU|1|AA|G|2657
4WQU|1|AA|C|2658
*
4WQU|1|AA|G|2686
4WQU|1|AA|A|2687
4WQU|1|AA|C|2688
*
4WQU|1|AA|G|2744
4WQU|1|AA|G|2745
4WQU|1|AA|A|2746
4WQU|1|AA|A|2747
4WQU|1|AA|G|2748
*
4WQU|1|AA|C|2782
4WQU|1|AA|G|2783
4WQU|1|AA|C|2784

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AN

50S ribosomal protein L13

Chain AO

50S ribosomal protein L14