J4_4WQU_019

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

4WQU|1|CA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQU_019 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0682

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4WQU|1|CA|G|1310
4WQU|1|CA|G|1311
4WQU|1|CA|U|1312
4WQU|1|CA|U|1313
4WQU|1|CA|C|1314
*
4WQU|1|CA|G|1338
4WQU|1|CA|G|1339
4WQU|1|CA|U|1340
4WQU|1|CA|U|1341
4WQU|1|CA|A|1342
4WQU|1|CA|G|1343
*
4WQU|1|CA|C|1404
4WQU|1|CA|U|1405
*
4WQU|1|CA|A|1597
4WQU|1|CA|C|1598
4WQU|1|CA|C|1599
4WQU|1|CA|C|1600
4WQU|1|CA|G|1601
4WQU|1|CA|U|1602
4WQU|1|CA|A|1603
4WQU|1|CA|C|1604

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C7

50S ribosomal protein L34

Chain CX

50S ribosomal protein L23