J4_4WQU_023

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

4WQU|1|CA|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQU_023 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.065

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4WQU|1|CA|U|1833
4WQU|1|CA|U|1834
4WQU|1|CA|G|1835
*
4WQU|1|CA|C|1905
4WQU|1|CA|G|1906
*
4WQU|1|CA|C|1924
4WQU|1|CA|C|1925
4WQU|1|CA|U|1926
4WQU|1|CA|A|1927
4WQU|1|CA|A|1928
4WQU|1|CA|G|1929
4WQU|1|CA|G|1930
4WQU|1|CA|U|1931
4WQU|1|CA|A|1932
4WQU|1|CA|G|1933
*
4WQU|1|CA|C|1967
4WQU|1|CA|G|1968
4WQU|1|CA|A|1969
4WQU|1|CA|A|1970
4WQU|1|CA|A|1971
4WQU|1|CA|A|1972

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CD

50S ribosomal protein L2

Chain DA

Small subunit ribosomal RNA; SSU rRNA

Chain DW

Transfer RNA; tRNA