J4_4WQU_025

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQU_025 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.0716

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4WQU|1|CA|G|2643
4WQU|1|CA|G|2644
4WQU|1|CA|G|2645
4WQU|1|CA|C|2646
*
4WQU|1|CA|G|2674
4WQU|1|CA|A|2675
4WQU|1|CA|C|2676
*
4WQU|1|CA|G|2731
4WQU|1|CA|G|2732
4WQU|1|CA|A|2733
4WQU|1|CA|A|2734
4WQU|1|CA|G|2735
*
4WQU|1|CA|C|2769
4WQU|1|CA|G|2770
4WQU|1|CA|C|2771

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CE

50S ribosomal protein L3

Chain CN

50S ribosomal protein L13

Chain CO

50S ribosomal protein L14